I purchased a CL 225 tanks that was saltwater with corner holes and huge internal skimmers. Since I dont do saltwater the use of skimmers in a fresh water tank was pointless especially when they were displacing 20 gallons of tank space.
Originally my plan was just to remove the skimmer towers and plug the holes myself with my own makeshift bulkhead plugs. Personally I think you will be allot better off with a bulkhead plug with seals which will not only ensure water tight integrity but keep the resale value higher for potential saltwater reef ready usage. Trying to plug wuth glass is a less secure application IMO
Because I discovered the bottom was cracked and painted over by the privious owner I eneded up paying him only $50 for the tank& cabinet and replacing the bottom panel with 1/2" tempered glass without holes and glad I did.
I believe the sump, skimmer and protein skimmer were built around the saltwater tank and very effective for that use, but unless modified for fresh water with a deep tank pick-up tube & strainer, provide very marginal benefit in a fresh water application IMO.
I have a sump with with the quintessential saltwater overflow strainer that pulls water only from the top where there is almost 0 suspended debris and if it were not for my supplemental canister filter to pick-up suspended debris and polish the water, I would have a pretty merky looking tank. I'm currently working on a fresh-water sump solution that will use a deep pick-up tube to filter all missed debris without the added risk of overflow flooding, making the sump a more effective for freshwater use.