The only thing that controls the speed of the siphon is the difference in height between the source container and the destination. Say you have two containers (i.e. the front part of an overflow box (the tank), and the back part of the overflow box). Now, say that when its running, the tank water level is 3/4" higher than the water level in the back of the box. Even if the back of the box was 10 feet deep, it wouldn't matter if the hose is two inches from the bottom or two inches from the top. The height differential (and therefore the pressure differential) is the only thing that influences a change in flow rate. Hopefully I explanined that clearly enough.
The only other thing I could say would be to lower the overflow box on the rim of the tank as much as possible - most boxes have little plastic screws to adjust the height of the box, and therefore the water level in the tank. If you get the box as low as possible, this might allow a larger pressure differential from the front to the back to bump up your flow a little.