I don't touch the substrate much on my tanks with plants. I might hit it gently with a gravel vac every once it a while during a water change. I don't touch the black sand in my 29g at all. Feeding with the high protein stuff will increase nitrates. I would feed a quality pellet or flake as a staple feed, with shrimp, bloodworms, etc, as a once per week treat. Too much protein = lots of nitrates.