I've gotten that type of algae from too long a photo period like mentioned above.
If it's a common pleco, they can get so big they can barely turn around in a ~50g tank.
The only rooted plants that would benefit from your Seachem flourish tabs are the sword and maybe anacharis. The rest are rhizome plants (water colm feeders)
It's a shame to use and discard comets for the purpose of cycling a tank, but it happens. Some comets can grow up to be real gems.
I have a bud with a pleco, its a little over a foot long. Didnt raise his though, he caught it one night fishing. What is a water colm feeder? As far as the comets go, there are 2 in the group i definitely plan on keeping.. possibly a third because its all silver, not a scale of gold on it. The 2 i want to keep have very nice color pattern going on. But they are some greedy b@st@rds. They eat the pellet that i put in for the pleco.
Since the tank is new, more than likely you have diatoms, or what is commonly referred to as new tank syndrome.
Do the brown spots brush away easily? If so, that's what you have. Nothing to be worried about, they will go away in time.
As to the Flourish tabs, in my opinion ten tabs way too much for a 50 gallon. That's a lot of nutrients that could be leaching into the water column. Watch out for other algae developing.
I figured a diatom bloom might have been the cause, i wasnt sure. I figured that was only something found in saltwater tanks. The spots are shrinking now that i have turned down the light time by 4 hrs. As far as the Flourish tabs, i will remove a few of them, i thought it may have been too much myself but there werent any clear instructions that i could find on how many to use.