You can add the water back to the tank, dechlor it before it goes in. I do not remember which dechlor you are using. But those products which state that they detoxify ammonia do act to slow a cycle, but not to stop it. A small water addition to top up the tank with the normal dose of dechlor for that amount of water should not create any issues. Do not dose for the whole tank.
Basically, the bacteria want their ammonia in the for toxic NH3 form. Some can also use NH4, but they do so much less efficiently.
I am very curious to see how things test tomorrow morning. best result- 0/0. But I think it will be more like 0/some level of nitrite. It may even have a low reading for ammonia and some level of nitrite.
Assuming you do not get that 0/0, when you do get the .25 or below for ammonia and are clearly below 1 ppm for nitrite, dose it back to 3 ppm and wait 24. You should also be aware that it is not uncommon with hobby ammonia test kits to get a persistent low level reading for ammonia which is not really there.
We know it is a false reading because of the process. If there is more ammonia available than the bacteria need to thrive, the bacteria will reproduce. So if you add 3 ppm of ammonia and then you keep getting a .25 ppm ammonia reading day after day, it cannot be real. If the bacteria can handle 2.75 ppm of ammonia in 24 hours, they should reproduce to handle a real excess .25 ppm in a very short time. Maybe and hour or so. And if the bacteria are being killed off or stalled, then ammonia should build up much higher than .25 ppm.