Actually, cloudiness is seldom related to the nitrifiers. These bacteria are firmaly attached to an object, very little free floating in the water column. They will not cause cloudiness. An imbalance in other microorganisms, including bacteria which feed on something other than ammonia/nitrites, is the most infrequent cause of cloudiness that is not green in color. Rather than moving the media, siphon some of the 'gunk' from the substrate, or clean the other media in a gallon of clean, dechlorinated water. Let it settle for a few hours, and then siphon the solids off the bottom. Put this into the cloudy tank to reintroduce the micro-fauna that does live in the water column. They will then establish a balance with the organisms that are clouding your water, clearing it. Be patient--it's not an immediate fix, but it will work. Cloudiness is seldom stressful or hazardous to the fish, so this is primarily an aesthetic issue.