I will try to add more agitation. The one tank that seems immune does have a pretty gnarly hob filter. Maybe that's my key. The tanks that are infested have canister filters.
ToddnBecka already mentioned this. Use a surface skimmer with those canister filters. If you are running canisters, this shouldn't be too hard to do. I used the Fluval Skimmer on a 105 back in April after really neglecting the tank because of tax season and finding duckweed so thick that the plants underneath could not get any light. I scooped out what I could and set up the canister with the skimmer. After a month or two the remnants of the duckweed were gone, and I have yet to see any in that tank since then. Just make sure you clean out that canister filter on a weekly basis. I ran mine without any carbon in it, just the standard foam, polishing pads in the first chamber, and nothing in the second chamber. Seemed to work just fine.