Meh, some folks swear by window tanks. Of the 5 tanks I have inside, 4 of them get exposure to window light, 2 of them direct sunshine for parts of the day. Yes I get algae blooms, but I get some algae in all my tanks(except notably from the newer one setup just below a South facing window that gets slices of direct rays 5-6 hours/day),but they're all manageable. And I'd wager most of the folks here do too, windows or not. I've taken some of the measures suggested by Walstad (who swears by putting her tanks in front of South facing windows) and they have helped tremendously. I've filtered the light using a cloth backdrop/background and I've made sure my substrate is not getting the sunlight.
FishyMatty, it is possible that your newer tank that got hit by an NH4 rise (cycling) and that fueled the outbreak. Just speculating of course.
Anyway, window lit tanks aren't to be avoided like the plague, in fact my emergent plants absolutely love the real sunshine and show it with their colors (and stems bent towards).