Only thing I'm confused about is that it doesn't seem to be wired onto the waste line. Instead it's wired after the membrane and before the ASO valve(which leads to the DI resin)...
I think you're confusing a check valve for a flow restrictor. The flow restrictor on your system is not visible because it is INSIDE one of the tubes. This should help:

Your flush kit is plumbed correctly, assuming your flow restrictor is where it should be - see the pic above, which includes explanation of the flush kit....it seems like the flush kit is wired onto the waste line. I thought the flush kit was supposed to be wired before the membrane so that it could increase the amount of water flowing over the membrane. Why would it be wired into the waste???
You actually do. The pic below should help:Another thing I noticed from watching the BRS vid on the auto top off kit and looking at that diagram above is that I dont have a check valve wired in after membrane and before the ASO valve. Is this necessary for the functioning of the auto top off?
