Agreed! Although rinsing out (in old water) reusable media from the Mag 350 that has been running for month with strong flow (a testament to its superiority) and placing that established media in a new Mag 350 will work, It is far better to add the new Mag 350 to the tank side by side with the old for a period of time (1 month) and like a relay race handing off a baton the bacteria will be established in the new filter.
Why I run two filters so that I can completely clean one while the other remains and I have never had a spike even if I decide to replace all the media when using 2 filters.
However in your case having waited so long, you probubly should not wait any longer and old water rinse the old media, however clean the canister body, impeller & chamber, valves and hoses with very hot tap water the tube & cable brush provided. Then just put that proven Magnum 350 back in service.
As for the gnats I have never heard of such a thing except around fruit bowl or plant soil in flower pots. The gnats have nothing to do with the canister filter, maybe an HOB power filter but not a canister like the Magnum.
I can see the gnat larvae in my water. There are literally hundreds, if not thousands. They look like tiny bubbles. Why do you say they can't live in the magnum filter?
btw, how loud is your filter? Some people say there's literally no sound... but mine is clearly audiable.