As long as the rhizome is above the substrate, the plant will be OK. I have a dozen A. nana petites - some are on driftwood and some are in the substrate - they all do fine. If you do bury the rhizome, the plant will die a very slow death, up to a month or so before you'll start to notice it. I used to bury Java fern rhizomes when I first started in the hobby over 20 yrs ago since I didn't know any better. Took a while to notice that the ones with exposed rhizomes were doing better than others in the tank.