I agree. I would not do a 90% WC unless there is a problem.i thought the 90% was a little over the top, but it doesn't hurt anything, just really pointless unless you have high nitrates, under 40 is safe, under 20ppm is great, for anyone new, i wouldn't ever advise large water changes like that unless it is an extreme case where fish are in the tank and somehow ammonia or nitrites spike. It is easy for someone to not add enough conditioner and kill off good bacteria with chlorine in the water, hopefully everything will finish up soon and you can get those fish in there.
No, I haven't checked tap water for that yet, but I am going too. I've been cycling for almost 4 weeks. As for the ammonia it drops pretty much overnight to 0ppm.Have you checked your tap water for ammonia,nitrites and nitrates?
More than likely the your cycle was just not completely finished,but it may be your tap,and it is easy enough to check.The nitrites always take the longest to drop to 0ppm.
How long have you been cycling? Are you still adding ammonia,and how many PPM are you getting it up to?How long does it take the ammonia to drop to 0ppm?
Like the others have said,changing 90% of the water certainly won't hurt anything,but then again it is not really necessary,unless the nitrates are very high.I doubt if it had anything to do with your rise in nitrites.