Runts are often stunted due to an accumulation of deleterious genes. A great and simpler example of this is black angelfish. If you incross two homozygous fish you'll get 100% homozygous fish which is great for the market but they grow very slow and it takes longer to get them to market. If you do a heterozygous x heterozygous cross you get 1/2 het blacks that grow well, 1/4 homo blacks that grow slow but are still marketable at the small size and 1/4 gold which is a nice fish in itself.
Same thing happens in goldfish. With the Philadelphia Veil-tail if you select to strongly on double anal fins you loose the length in the tail. If the tails grow to fast they can swamp slow growing fish and they just get weak and die.
If you push a strain to hard on a trait especially small size you're going to crash a line.
You can't sell tiny fish, people want a certain size fish (~2inches) but they just don't want it to get 8 inches. If a runt strain takes 3x the time to reach market as a normal fish no one is going to pay the extra $$$ for a goldfish that stays small.
Market size of 2"... If you develop a new breed, change the market. i.e. charge a premium for them. Say a normal goldfish at 2" you can sell at $1, a goldfish for smaller tanks at 1" you can start out at $10-25. Advertise as a breed that is perfect for smaller aquariums. It will live 15+ years in a 20 gallon. It's called creating a niche. Those who do it first successfully get the highest profit of course it also involves the highest risk and you might lose your shorts on it.

You seem not to be able to understand that overall adult size does not necessarily have to be from negative genes. When you are breeding for other traits they do pop up and can lead to smaller sizes. Size gene are usually QTL's with complex inheritance. These are often unpublished because of the difficulty and population specificity to them.. You seem to have practical experience in raising/breeding fish but not a strong understanding of genetics. You write about line breeding, this is a very commonly used technique because it is simple but often has disastrous results. There are other ways to breed but are usually slower and take more expertise. Population shift techniques would probably be best in this instance. Basically the goal is to shift the population to a smaller size while still maintaining enough diversity to overcome deleterious genes.
All fish we keep in aquariums survive in much larger bodies of water in the wild. In keeping them inside tanks we just have to be sure to offer them the best possible environment. 180 properly cared for is more than large enough to house 10-12 single tailed goldfish. The key phrase of course is properly cared for.Large fish are frequently kept in aquariums but it is not a wise thing to do regardless of the apparent "success" of keeping the fish alive. Single tail Goldfish can get very large although it is possible to find runts that would fit in a 180. But how can you be sure in a reasonable time frame?