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Now the one thing that is important if you run it that way is the U Tube on the back side of the box must be lower than the white PVC pipe for the drain, if it isn't the syphon will break on a power outtage and flood over the top of the tank. That is why the center chamber on the back side is taller, so the syphon doesn't break. I would try putting the tubes back in the center and just spreading them apart as much as possible on the front side and see if you get the same good results, if you don't, you know the problem is that middle chamber but it shouldn't be.
I am thinking the 2 U Tubes so close to each other on the front side were causing a problem, they were fighting each other/pulling water from each other and lowering the total GPH they can handle, which is why I am thinking if you just spread them apart as much as possible on the front side it will solve your problem.
Now the one thing that is important if you run it that way is the U Tube on the back side of the box must be lower than the white PVC pipe for the drain, if it isn't the syphon will break on a power outtage and flood over the top of the tank. That is why the center chamber on the back side is taller, so the syphon doesn't break. I would try putting the tubes back in the center and just spreading them apart as much as possible on the front side and see if you get the same good results, if you don't, you know the problem is that middle chamber but it shouldn't be.
I am thinking the 2 U Tubes so close to each other on the front side were causing a problem, they were fighting each other/pulling water from each other and lowering the total GPH they can handle, which is why I am thinking if you just spread them apart as much as possible on the front side it will solve your problem.